I used to frequent Almond Butterfly at lunch when I worked in the area. The staff are helpful and their cupcakes became a staple for birthdays and other celebrations around the office.
Unfortunately there are only ~10 spots inside and a small table for two on the patio, but most people come in to grab and go. They have a stellar selection of baked goods on display - breakfast cookies, warm cinnamon buns and paleo bites. Everything's gluten-free and they also have some dairy-free sweet treats. I've tried their cupcakes and paleo molten lava cake, but the real star is the show is the GFT (home-made bagel with turkey, spinach, pesto and white cheddar). Their bagels are the best I've ever had - Montreal-style, very soft and not too bread-y.
The cupcake flavours change up daily so I often check their Instagram account before going. When you get a cupcake to go, they put it in an upside down plastic cup so you can easily bring it around.